How to add a categorical legend to networkx bokeh plot










1















I have the following code to make a bokeh plot from NetworkX



p = figure(x_range=(-1.1, 1.1), y_range=(-1.1, 1.1))
p.grid.visible = False
p.axis.visible = False

graph_renderer = from_networkx(G, nx.spring_layout, random_state=11, center=(0, 0), scale=1, k=0.5)
color_map = factor_cmap('domain_cat', factors=factors, palette=Category10_6)

graph_renderer.node_renderer.glyph = Circle(radius=0.02, fill_color=color_map, line_color=None, fill_alpha=1)
graph_renderer.edge_renderer.glyph = MultiLine(line_color='lightgray', line_alpha=0.3, line_width=2)
p.renderers.append(graph_renderer)

p.add_tools(HoverTool(tooltips='@index', show_arrow=None))

show(p)


It works great. However, I have a categorical color map for my nodes. I would like to add a legend.



When using the plotting interface you can easily add a categorical legend by just entering the source column name (https://bokeh.pydata.org/en/latest/docs/user_guide/categorical.html#colors).



However, I can't figure out how to generate, even through the models interface, using Legend and LegendItem, a categorical legend.



I have tried variants of:



items = [LegendItem(label=factor, renderers=[graph_renderer.node_renderer]) for factor in factors]
legend = Legend(items=items)
p.add_layout(legend)


But this produces the following result, with an empty legend that's the correct height and console errors that read TypeError: v is undefined; can't access its "draw_legend" property.



enter image description here










share|improve this question


























    1















    I have the following code to make a bokeh plot from NetworkX



    p = figure(x_range=(-1.1, 1.1), y_range=(-1.1, 1.1))
    p.grid.visible = False
    p.axis.visible = False

    graph_renderer = from_networkx(G, nx.spring_layout, random_state=11, center=(0, 0), scale=1, k=0.5)
    color_map = factor_cmap('domain_cat', factors=factors, palette=Category10_6)

    graph_renderer.node_renderer.glyph = Circle(radius=0.02, fill_color=color_map, line_color=None, fill_alpha=1)
    graph_renderer.edge_renderer.glyph = MultiLine(line_color='lightgray', line_alpha=0.3, line_width=2)
    p.renderers.append(graph_renderer)

    p.add_tools(HoverTool(tooltips='@index', show_arrow=None))

    show(p)


    It works great. However, I have a categorical color map for my nodes. I would like to add a legend.



    When using the plotting interface you can easily add a categorical legend by just entering the source column name (https://bokeh.pydata.org/en/latest/docs/user_guide/categorical.html#colors).



    However, I can't figure out how to generate, even through the models interface, using Legend and LegendItem, a categorical legend.



    I have tried variants of:



    items = [LegendItem(label=factor, renderers=[graph_renderer.node_renderer]) for factor in factors]
    legend = Legend(items=items)
    p.add_layout(legend)


    But this produces the following result, with an empty legend that's the correct height and console errors that read TypeError: v is undefined; can't access its "draw_legend" property.



    enter image description here










    share|improve this question
























      1












      1








      1








      I have the following code to make a bokeh plot from NetworkX



      p = figure(x_range=(-1.1, 1.1), y_range=(-1.1, 1.1))
      p.grid.visible = False
      p.axis.visible = False

      graph_renderer = from_networkx(G, nx.spring_layout, random_state=11, center=(0, 0), scale=1, k=0.5)
      color_map = factor_cmap('domain_cat', factors=factors, palette=Category10_6)

      graph_renderer.node_renderer.glyph = Circle(radius=0.02, fill_color=color_map, line_color=None, fill_alpha=1)
      graph_renderer.edge_renderer.glyph = MultiLine(line_color='lightgray', line_alpha=0.3, line_width=2)
      p.renderers.append(graph_renderer)

      p.add_tools(HoverTool(tooltips='@index', show_arrow=None))

      show(p)


      It works great. However, I have a categorical color map for my nodes. I would like to add a legend.



      When using the plotting interface you can easily add a categorical legend by just entering the source column name (https://bokeh.pydata.org/en/latest/docs/user_guide/categorical.html#colors).



      However, I can't figure out how to generate, even through the models interface, using Legend and LegendItem, a categorical legend.



      I have tried variants of:



      items = [LegendItem(label=factor, renderers=[graph_renderer.node_renderer]) for factor in factors]
      legend = Legend(items=items)
      p.add_layout(legend)


      But this produces the following result, with an empty legend that's the correct height and console errors that read TypeError: v is undefined; can't access its "draw_legend" property.



      enter image description here










      share|improve this question














      I have the following code to make a bokeh plot from NetworkX



      p = figure(x_range=(-1.1, 1.1), y_range=(-1.1, 1.1))
      p.grid.visible = False
      p.axis.visible = False

      graph_renderer = from_networkx(G, nx.spring_layout, random_state=11, center=(0, 0), scale=1, k=0.5)
      color_map = factor_cmap('domain_cat', factors=factors, palette=Category10_6)

      graph_renderer.node_renderer.glyph = Circle(radius=0.02, fill_color=color_map, line_color=None, fill_alpha=1)
      graph_renderer.edge_renderer.glyph = MultiLine(line_color='lightgray', line_alpha=0.3, line_width=2)
      p.renderers.append(graph_renderer)

      p.add_tools(HoverTool(tooltips='@index', show_arrow=None))

      show(p)


      It works great. However, I have a categorical color map for my nodes. I would like to add a legend.



      When using the plotting interface you can easily add a categorical legend by just entering the source column name (https://bokeh.pydata.org/en/latest/docs/user_guide/categorical.html#colors).



      However, I can't figure out how to generate, even through the models interface, using Legend and LegendItem, a categorical legend.



      I have tried variants of:



      items = [LegendItem(label=factor, renderers=[graph_renderer.node_renderer]) for factor in factors]
      legend = Legend(items=items)
      p.add_layout(legend)


      But this produces the following result, with an empty legend that's the correct height and console errors that read TypeError: v is undefined; can't access its "draw_legend" property.



      enter image description here







      python data-visualization networkx bokeh






      share|improve this question













      share|improve this question











      share|improve this question




      share|improve this question










      asked Nov 13 '18 at 2:40









      birdsarahbirdsarah

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