Creating a new variable while looping over rows in a tibble



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0















I have been delving into the whole tidyverse ecosystem (just a little bit) and I have been wondering how to solve the follwing problem with it.
More in general, I have been wondering how to write custom functions in transmute which deal with (loops over) rows



My problem: I would like to compute a distance metric between the last row of my dataset and all other rows. Afterwards, I would like to add the vector with the distance metrics to my data.



Here is a minimum reproducible example of what I am trying to do in a non-tidyverse way



data(iris)
mydata <- iris[, -5]

mydata$distance <- sapply(1:nrow(mydata), function(j)
dist(rbind(mydata[nrow(mydata), ], mydata[j, ])))


This works and gives me what I need.



However, my tidyverse attempt for a solution is failing and I have been banging my head on this problem - would appreciate the help!



mydata <- select(iris, -Species)
mydata %>% transmute(function(x)
for (i in 1:nrow(x))
dist(rbind(x[i, ],x[nrow(x), ]))

)


Thanks a lot!










share|improve this question






























    0















    I have been delving into the whole tidyverse ecosystem (just a little bit) and I have been wondering how to solve the follwing problem with it.
    More in general, I have been wondering how to write custom functions in transmute which deal with (loops over) rows



    My problem: I would like to compute a distance metric between the last row of my dataset and all other rows. Afterwards, I would like to add the vector with the distance metrics to my data.



    Here is a minimum reproducible example of what I am trying to do in a non-tidyverse way



    data(iris)
    mydata <- iris[, -5]

    mydata$distance <- sapply(1:nrow(mydata), function(j)
    dist(rbind(mydata[nrow(mydata), ], mydata[j, ])))


    This works and gives me what I need.



    However, my tidyverse attempt for a solution is failing and I have been banging my head on this problem - would appreciate the help!



    mydata <- select(iris, -Species)
    mydata %>% transmute(function(x)
    for (i in 1:nrow(x))
    dist(rbind(x[i, ],x[nrow(x), ]))

    )


    Thanks a lot!










    share|improve this question


























      0












      0








      0


      1






      I have been delving into the whole tidyverse ecosystem (just a little bit) and I have been wondering how to solve the follwing problem with it.
      More in general, I have been wondering how to write custom functions in transmute which deal with (loops over) rows



      My problem: I would like to compute a distance metric between the last row of my dataset and all other rows. Afterwards, I would like to add the vector with the distance metrics to my data.



      Here is a minimum reproducible example of what I am trying to do in a non-tidyverse way



      data(iris)
      mydata <- iris[, -5]

      mydata$distance <- sapply(1:nrow(mydata), function(j)
      dist(rbind(mydata[nrow(mydata), ], mydata[j, ])))


      This works and gives me what I need.



      However, my tidyverse attempt for a solution is failing and I have been banging my head on this problem - would appreciate the help!



      mydata <- select(iris, -Species)
      mydata %>% transmute(function(x)
      for (i in 1:nrow(x))
      dist(rbind(x[i, ],x[nrow(x), ]))

      )


      Thanks a lot!










      share|improve this question
















      I have been delving into the whole tidyverse ecosystem (just a little bit) and I have been wondering how to solve the follwing problem with it.
      More in general, I have been wondering how to write custom functions in transmute which deal with (loops over) rows



      My problem: I would like to compute a distance metric between the last row of my dataset and all other rows. Afterwards, I would like to add the vector with the distance metrics to my data.



      Here is a minimum reproducible example of what I am trying to do in a non-tidyverse way



      data(iris)
      mydata <- iris[, -5]

      mydata$distance <- sapply(1:nrow(mydata), function(j)
      dist(rbind(mydata[nrow(mydata), ], mydata[j, ])))


      This works and gives me what I need.



      However, my tidyverse attempt for a solution is failing and I have been banging my head on this problem - would appreciate the help!



      mydata <- select(iris, -Species)
      mydata %>% transmute(function(x)
      for (i in 1:nrow(x))
      dist(rbind(x[i, ],x[nrow(x), ]))

      )


      Thanks a lot!







      r tidyverse tibble






      share|improve this question















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      edited Nov 15 '18 at 14:02









      iod

      4,4632726




      4,4632726










      asked Nov 15 '18 at 13:58









      Jean_NJean_N

      486




      486






















          1 Answer
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          0














          If you're looking to add the vector to your data, you'd want to use mutate rather than transmute. transmute just gives you back the single result while mutate adds the column to the data.



          You original function works as well, but if you want to go full tidyverse you'd be swapping out sapply for map_dbl (from purrr), and rbind for bind_rows



          mydata <- select(iris, -Species) %>% 
          mutate(distance = map_dbl(1:nrow(mydata), ~dist(bind_rows(mydata[nrow(mydata), ], mydata[.x, ]))))





          share|improve this answer























          • thank you very much, Jake! I didn't know about purrr, I will look into it! cheers

            – Jean_N
            Nov 15 '18 at 15:36











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          1 Answer
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          active

          oldest

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          1 Answer
          1






          active

          oldest

          votes









          active

          oldest

          votes






          active

          oldest

          votes









          0














          If you're looking to add the vector to your data, you'd want to use mutate rather than transmute. transmute just gives you back the single result while mutate adds the column to the data.



          You original function works as well, but if you want to go full tidyverse you'd be swapping out sapply for map_dbl (from purrr), and rbind for bind_rows



          mydata <- select(iris, -Species) %>% 
          mutate(distance = map_dbl(1:nrow(mydata), ~dist(bind_rows(mydata[nrow(mydata), ], mydata[.x, ]))))





          share|improve this answer























          • thank you very much, Jake! I didn't know about purrr, I will look into it! cheers

            – Jean_N
            Nov 15 '18 at 15:36















          0














          If you're looking to add the vector to your data, you'd want to use mutate rather than transmute. transmute just gives you back the single result while mutate adds the column to the data.



          You original function works as well, but if you want to go full tidyverse you'd be swapping out sapply for map_dbl (from purrr), and rbind for bind_rows



          mydata <- select(iris, -Species) %>% 
          mutate(distance = map_dbl(1:nrow(mydata), ~dist(bind_rows(mydata[nrow(mydata), ], mydata[.x, ]))))





          share|improve this answer























          • thank you very much, Jake! I didn't know about purrr, I will look into it! cheers

            – Jean_N
            Nov 15 '18 at 15:36













          0












          0








          0







          If you're looking to add the vector to your data, you'd want to use mutate rather than transmute. transmute just gives you back the single result while mutate adds the column to the data.



          You original function works as well, but if you want to go full tidyverse you'd be swapping out sapply for map_dbl (from purrr), and rbind for bind_rows



          mydata <- select(iris, -Species) %>% 
          mutate(distance = map_dbl(1:nrow(mydata), ~dist(bind_rows(mydata[nrow(mydata), ], mydata[.x, ]))))





          share|improve this answer













          If you're looking to add the vector to your data, you'd want to use mutate rather than transmute. transmute just gives you back the single result while mutate adds the column to the data.



          You original function works as well, but if you want to go full tidyverse you'd be swapping out sapply for map_dbl (from purrr), and rbind for bind_rows



          mydata <- select(iris, -Species) %>% 
          mutate(distance = map_dbl(1:nrow(mydata), ~dist(bind_rows(mydata[nrow(mydata), ], mydata[.x, ]))))






          share|improve this answer












          share|improve this answer



          share|improve this answer










          answered Nov 15 '18 at 14:37









          Jake KauppJake Kaupp

          5,74721428




          5,74721428












          • thank you very much, Jake! I didn't know about purrr, I will look into it! cheers

            – Jean_N
            Nov 15 '18 at 15:36

















          • thank you very much, Jake! I didn't know about purrr, I will look into it! cheers

            – Jean_N
            Nov 15 '18 at 15:36
















          thank you very much, Jake! I didn't know about purrr, I will look into it! cheers

          – Jean_N
          Nov 15 '18 at 15:36





          thank you very much, Jake! I didn't know about purrr, I will look into it! cheers

          – Jean_N
          Nov 15 '18 at 15:36



















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