Can't install caret package in R
I have tried multiple ways to install the caret package in R.
The error message that I receive is as follows:
Error: package or namespace load failed for ‘caret’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘dimRed’
When I try to install dimRed, I get the following message:
Installing package into ‘C:/Users/Thomas/Documents/R/win-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
dependency ‘Biobase’ is not available
There is a binary version available but the source version is later:
binary source needs_compilation
dimRed 0.1.0 0.2.1 FALSE
installing the source package ‘dimRed’
trying URL 'https://cran.rstudio.com/src/contrib/dimRed_0.2.1.tar.gz'
Content type 'application/x-gzip' length 363025 bytes (354 KB)
downloaded 354 KB
ERROR: dependency 'Biobase' is not available for package 'dimRed'
* removing 'C:/Users/Thomas/Documents/R/win-library/3.4/dimRed'
In R CMD INSTALL
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-34~1.4/bin/x64/R" CMD INSTALL -l "C:UsersThomasDocumentsRwin-library3.4" C:UsersThomasAppDataLocalTempRtmpqKhsKn/downloaded_packages/dimRed_0.2.1.tar.gz' had status 1
Warning in install.packages :
installation of package ‘dimRed’ had non-zero exit status
The downloaded source packages are in
‘C:UsersThomasAppDataLocalTempRtmpqKhsKndownloaded_packages’
Per previous posts, I have updated RStudio. I have attempted an install from install_url.
Any suggestions are welcome.
r rstudio r-caret
edited Nov 13 '18 at 10:51
Tjebo
2,3911428
asked Nov 13 '18 at 0:44
coultcoult
161
add a comment |
I have tried multiple ways to install the caret package in R.
The error message that I receive is as follows:
Error: package or namespace load failed for ‘caret’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘dimRed’
When I try to install dimRed, I get the following message:
Installing package into ‘C:/Users/Thomas/Documents/R/win-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
dependency ‘Biobase’ is not available
There is a binary version available but the source version is later:
binary source needs_compilation
dimRed 0.1.0 0.2.1 FALSE
installing the source package ‘dimRed’
trying URL 'https://cran.rstudio.com/src/contrib/dimRed_0.2.1.tar.gz'
Content type 'application/x-gzip' length 363025 bytes (354 KB)
downloaded 354 KB
ERROR: dependency 'Biobase' is not available for package 'dimRed'
* removing 'C:/Users/Thomas/Documents/R/win-library/3.4/dimRed'
In R CMD INSTALL
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-34~1.4/bin/x64/R" CMD INSTALL -l "C:UsersThomasDocumentsRwin-library3.4" C:UsersThomasAppDataLocalTempRtmpqKhsKn/downloaded_packages/dimRed_0.2.1.tar.gz' had status 1
Warning in install.packages :
installation of package ‘dimRed’ had non-zero exit status
The downloaded source packages are in
‘C:UsersThomasAppDataLocalTempRtmpqKhsKndownloaded_packages’
Per previous posts, I have updated RStudio. I have attempted an install from install_url.
Any suggestions are welcome.
r rstudio r-caret
edited Nov 13 '18 at 10:51
Tjebo
2,3911428
asked Nov 13 '18 at 0:44
coultcoult
161
1
Have you tried installingbiobasefirst? See the documentation for installation help
– CIAndrews
Nov 13 '18 at 0:52
1
These are confusing messages. Biobase is a Bioconductor package. Neither it, nor dimRed seem to be required for caret, according to its CRAN page. It sounds like your current R environment is just messed up. I would restart R and try again.
– neilfws
Nov 13 '18 at 0:56
It's possible that one of the package required bycaret(and there are a big boatload of them) does havedimRedas a dependency. I just installedcaretand dimRed was installed during the dependencies phase. Si suggestions to reinstall my be a waste of time. (I did already have Biobase installed.)
– 42-
Nov 13 '18 at 1:43
I ran install.packages("dimRed", dependencies = T) and now my base error message has changed to - > library("caret") Error: package or namespace load failed for ‘caret’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package called ‘Biobase’. When I try to install Biobase, I'm told that it is not available on R3.4.4. Any ideas?
– coult
Nov 13 '18 at 2:38
I had a similar problem. In my case, as @neilfws mentioned, some of the libraries were likely open in my on-going RStudio session. I just re-started RStudio, usedinstall.packages("caret", dependencies = TRUE)and all was fine.
– JASC
Jan 10 at 16:40
add a comment |
I have tried multiple ways to install the caret package in R.
The error message that I receive is as follows:
Error: package or namespace load failed for ‘caret’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘dimRed’
When I try to install dimRed, I get the following message:
Installing package into ‘C:/Users/Thomas/Documents/R/win-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
dependency ‘Biobase’ is not available
There is a binary version available but the source version is later:
binary source needs_compilation
dimRed 0.1.0 0.2.1 FALSE
installing the source package ‘dimRed’
trying URL 'https://cran.rstudio.com/src/contrib/dimRed_0.2.1.tar.gz'
Content type 'application/x-gzip' length 363025 bytes (354 KB)
downloaded 354 KB
ERROR: dependency 'Biobase' is not available for package 'dimRed'
* removing 'C:/Users/Thomas/Documents/R/win-library/3.4/dimRed'
In R CMD INSTALL
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-34~1.4/bin/x64/R" CMD INSTALL -l "C:UsersThomasDocumentsRwin-library3.4" C:UsersThomasAppDataLocalTempRtmpqKhsKn/downloaded_packages/dimRed_0.2.1.tar.gz' had status 1
Warning in install.packages :
installation of package ‘dimRed’ had non-zero exit status
The downloaded source packages are in
‘C:UsersThomasAppDataLocalTempRtmpqKhsKndownloaded_packages’
Per previous posts, I have updated RStudio. I have attempted an install from install_url.
Any suggestions are welcome.
r rstudio r-caret
edited Nov 13 '18 at 10:51
Tjebo
2,3911428
asked Nov 13 '18 at 0:44
coultcoult
161
I have tried multiple ways to install the caret package in R.
The error message that I receive is as follows:
Error: package or namespace load failed for ‘caret’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘dimRed’
When I try to install dimRed, I get the following message:
Installing package into ‘C:/Users/Thomas/Documents/R/win-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
dependency ‘Biobase’ is not available
There is a binary version available but the source version is later:
binary source needs_compilation
dimRed 0.1.0 0.2.1 FALSE
installing the source package ‘dimRed’
trying URL 'https://cran.rstudio.com/src/contrib/dimRed_0.2.1.tar.gz'
Content type 'application/x-gzip' length 363025 bytes (354 KB)
downloaded 354 KB
ERROR: dependency 'Biobase' is not available for package 'dimRed'
* removing 'C:/Users/Thomas/Documents/R/win-library/3.4/dimRed'
In R CMD INSTALL
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-34~1.4/bin/x64/R" CMD INSTALL -l "C:UsersThomasDocumentsRwin-library3.4" C:UsersThomasAppDataLocalTempRtmpqKhsKn/downloaded_packages/dimRed_0.2.1.tar.gz' had status 1
Warning in install.packages :
installation of package ‘dimRed’ had non-zero exit status
The downloaded source packages are in
‘C:UsersThomasAppDataLocalTempRtmpqKhsKndownloaded_packages’
Per previous posts, I have updated RStudio. I have attempted an install from install_url.
Any suggestions are welcome.
r rstudio r-caret
r rstudio r-caret
edited Nov 13 '18 at 10:51
Tjebo
2,3911428
asked Nov 13 '18 at 0:44
coultcoult
161
edited Nov 13 '18 at 10:51
Tjebo
2,3911428
asked Nov 13 '18 at 0:44
coultcoult
161
edited Nov 13 '18 at 10:51
Tjebo
2,3911428
edited Nov 13 '18 at 10:51
Tjebo
2,3911428
edited Nov 13 '18 at 10:51
Tjebo
2,3911428
2,3911428
asked Nov 13 '18 at 0:44
coultcoult
161
asked Nov 13 '18 at 0:44
coultcoult
161
asked Nov 13 '18 at 0:44
coultcoult
161
161
1
Have you tried installingbiobasefirst? See the documentation for installation help
– CIAndrews
Nov 13 '18 at 0:52
1
These are confusing messages. Biobase is a Bioconductor package. Neither it, nor dimRed seem to be required for caret, according to its CRAN page. It sounds like your current R environment is just messed up. I would restart R and try again.
– neilfws
Nov 13 '18 at 0:56
It's possible that one of the package required bycaret(and there are a big boatload of them) does havedimRedas a dependency. I just installedcaretand dimRed was installed during the dependencies phase. Si suggestions to reinstall my be a waste of time. (I did already have Biobase installed.)
– 42-
Nov 13 '18 at 1:43
I ran install.packages("dimRed", dependencies = T) and now my base error message has changed to - > library("caret") Error: package or namespace load failed for ‘caret’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package called ‘Biobase’. When I try to install Biobase, I'm told that it is not available on R3.4.4. Any ideas?
– coult
Nov 13 '18 at 2:38
I had a similar problem. In my case, as @neilfws mentioned, some of the libraries were likely open in my on-going RStudio session. I just re-started RStudio, usedinstall.packages("caret", dependencies = TRUE)and all was fine.
– JASC
Jan 10 at 16:40
add a comment |
1
Have you tried installingbiobasefirst? See the documentation for installation help
– CIAndrews
Nov 13 '18 at 0:52
1
These are confusing messages. Biobase is a Bioconductor package. Neither it, nor dimRed seem to be required for caret, according to its CRAN page. It sounds like your current R environment is just messed up. I would restart R and try again.
– neilfws
Nov 13 '18 at 0:56
It's possible that one of the package required bycaret(and there are a big boatload of them) does havedimRedas a dependency. I just installedcaretand dimRed was installed during the dependencies phase. Si suggestions to reinstall my be a waste of time. (I did already have Biobase installed.)
– 42-
Nov 13 '18 at 1:43
I ran install.packages("dimRed", dependencies = T) and now my base error message has changed to - > library("caret") Error: package or namespace load failed for ‘caret’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package called ‘Biobase’. When I try to install Biobase, I'm told that it is not available on R3.4.4. Any ideas?
– coult
Nov 13 '18 at 2:38
I had a similar problem. In my case, as @neilfws mentioned, some of the libraries were likely open in my on-going RStudio session. I just re-started RStudio, usedinstall.packages("caret", dependencies = TRUE)and all was fine.
– JASC
Jan 10 at 16:40
1
1
Have you tried installing
biobase first? See the documentation for installation help– CIAndrews
Nov 13 '18 at 0:52
Have you tried installing
biobase first? See the documentation for installation help– CIAndrews
Nov 13 '18 at 0:52
1
1
These are confusing messages. Biobase is a Bioconductor package. Neither it, nor dimRed seem to be required for caret, according to its CRAN page. It sounds like your current R environment is just messed up. I would restart R and try again.
– neilfws
Nov 13 '18 at 0:56
These are confusing messages. Biobase is a Bioconductor package. Neither it, nor dimRed seem to be required for caret, according to its CRAN page. It sounds like your current R environment is just messed up. I would restart R and try again.
– neilfws
Nov 13 '18 at 0:56
It's possible that one of the package required by
caret(and there are a big boatload of them) does have dimRed as a dependency. I just installed caret and dimRed was installed during the dependencies phase. Si suggestions to reinstall my be a waste of time. (I did already have Biobase installed.)– 42-
Nov 13 '18 at 1:43
It's possible that one of the package required by
caret(and there are a big boatload of them) does have dimRed as a dependency. I just installed caret and dimRed was installed during the dependencies phase. Si suggestions to reinstall my be a waste of time. (I did already have Biobase installed.)– 42-
Nov 13 '18 at 1:43
I ran install.packages("dimRed", dependencies = T) and now my base error message has changed to - > library("caret") Error: package or namespace load failed for ‘caret’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package called ‘Biobase’. When I try to install Biobase, I'm told that it is not available on R3.4.4. Any ideas?
– coult
Nov 13 '18 at 2:38
I ran install.packages("dimRed", dependencies = T) and now my base error message has changed to - > library("caret") Error: package or namespace load failed for ‘caret’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package called ‘Biobase’. When I try to install Biobase, I'm told that it is not available on R3.4.4. Any ideas?
– coult
Nov 13 '18 at 2:38
I had a similar problem. In my case, as @neilfws mentioned, some of the libraries were likely open in my on-going RStudio session. I just re-started RStudio, used
install.packages("caret", dependencies = TRUE) and all was fine.– JASC
Jan 10 at 16:40
I had a similar problem. In my case, as @neilfws mentioned, some of the libraries were likely open in my on-going RStudio session. I just re-started RStudio, used
install.packages("caret", dependencies = TRUE) and all was fine.– JASC
Jan 10 at 16:40
add a comment |
2 Answers
2
active
oldest
votes
I was able to figure this out.
Simply typing install.packages won't work. In order to install Biobase, you have to run the following code in R console:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Biobase", version = "3.8")
More info: https://bioconductor.org/packages/release/bioc/html/Biobase.html
Once this step is done, I installed caret again using
install.packages("caret",dependencies = T)
And then it worked.
answered Nov 13 '18 at 3:15
user2730749user2730749
311
I have had the same issue as the questioner. I attempted this and once I triedlibrary(caret)I got the same 1st error as the questioner.
– a.powell
Nov 13 '18 at 18:25
Maybe it has something to do with the R version, as pointed out by a previous response. I was using R version 3.5.1 (2018-07-02) under Windows 10 Pro. And I used install.packages("caret",dependencies = T). You can try this out and see if there are any dependencies other than the Biobase package for caret.
– user2730749
Nov 18 '18 at 3:47
add a comment |
Warning ...
install.packages("BiocManager")
This only works if your R version is >= 3.5.0
for info I've the same problem under a Centos and a Windows.
issue solved on the windows with 3.5.1 R version. Not yet solved on the centOS (3.4.2)
answered Nov 13 '18 at 10:13
G. XibG. Xib
12
add a comment |
Your Answer
StackExchange.ifUsing("editor", function ()
StackExchange.using("externalEditor", function ()
StackExchange.using("snippets", function ()
StackExchange.snippets.init();
);
);
, "code-snippets");
StackExchange.ready(function()
var channelOptions =
tags: "".split(" "),
id: "1"
;
initTagRenderer("".split(" "), "".split(" "), channelOptions);
StackExchange.using("externalEditor", function()
// Have to fire editor after snippets, if snippets enabled
if (StackExchange.settings.snippets.snippetsEnabled)
StackExchange.using("snippets", function()
createEditor();
);
else
createEditor();
);
function createEditor()
StackExchange.prepareEditor(
heartbeatType: 'answer',
autoActivateHeartbeat: false,
convertImagesToLinks: true,
noModals: true,
showLowRepImageUploadWarning: true,
reputationToPostImages: 10,
bindNavPrevention: true,
postfix: "",
imageUploader:
brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
allowUrls: true
,
onDemand: true,
discardSelector: ".discard-answer"
,immediatelyShowMarkdownHelp:true
);
);
Sign up or log in
StackExchange.ready(function ()
StackExchange.helpers.onClickDraftSave('#login-link');
);
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function ()
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53272166%2fcant-install-caret-package-in-r%23new-answer', 'question_page');
);
Post as a guest
Required, but never shown
2 Answers
2
active
oldest
votes
2 Answers
2
active
oldest
votes
active
oldest
votes
active
oldest
votes
I was able to figure this out.
Simply typing install.packages won't work. In order to install Biobase, you have to run the following code in R console:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Biobase", version = "3.8")
More info: https://bioconductor.org/packages/release/bioc/html/Biobase.html
Once this step is done, I installed caret again using
install.packages("caret",dependencies = T)
And then it worked.
answered Nov 13 '18 at 3:15
user2730749user2730749
311
I have had the same issue as the questioner. I attempted this and once I triedlibrary(caret)I got the same 1st error as the questioner.
– a.powell
Nov 13 '18 at 18:25
Maybe it has something to do with the R version, as pointed out by a previous response. I was using R version 3.5.1 (2018-07-02) under Windows 10 Pro. And I used install.packages("caret",dependencies = T). You can try this out and see if there are any dependencies other than the Biobase package for caret.
– user2730749
Nov 18 '18 at 3:47
add a comment |
I was able to figure this out.
Simply typing install.packages won't work. In order to install Biobase, you have to run the following code in R console:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Biobase", version = "3.8")
More info: https://bioconductor.org/packages/release/bioc/html/Biobase.html
Once this step is done, I installed caret again using
install.packages("caret",dependencies = T)
And then it worked.
answered Nov 13 '18 at 3:15
user2730749user2730749
311
I have had the same issue as the questioner. I attempted this and once I triedlibrary(caret)I got the same 1st error as the questioner.
– a.powell
Nov 13 '18 at 18:25
Maybe it has something to do with the R version, as pointed out by a previous response. I was using R version 3.5.1 (2018-07-02) under Windows 10 Pro. And I used install.packages("caret",dependencies = T). You can try this out and see if there are any dependencies other than the Biobase package for caret.
– user2730749
Nov 18 '18 at 3:47
add a comment |
I was able to figure this out.
Simply typing install.packages won't work. In order to install Biobase, you have to run the following code in R console:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Biobase", version = "3.8")
More info: https://bioconductor.org/packages/release/bioc/html/Biobase.html
Once this step is done, I installed caret again using
install.packages("caret",dependencies = T)
And then it worked.
answered Nov 13 '18 at 3:15
user2730749user2730749
311
I was able to figure this out.
Simply typing install.packages won't work. In order to install Biobase, you have to run the following code in R console:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Biobase", version = "3.8")
More info: https://bioconductor.org/packages/release/bioc/html/Biobase.html
Once this step is done, I installed caret again using
install.packages("caret",dependencies = T)
And then it worked.
answered Nov 13 '18 at 3:15
user2730749user2730749
311
answered Nov 13 '18 at 3:15
user2730749user2730749
311
answered Nov 13 '18 at 3:15
user2730749user2730749
311
answered Nov 13 '18 at 3:15
user2730749user2730749
311
311
I have had the same issue as the questioner. I attempted this and once I triedlibrary(caret)I got the same 1st error as the questioner.
– a.powell
Nov 13 '18 at 18:25
Maybe it has something to do with the R version, as pointed out by a previous response. I was using R version 3.5.1 (2018-07-02) under Windows 10 Pro. And I used install.packages("caret",dependencies = T). You can try this out and see if there are any dependencies other than the Biobase package for caret.
– user2730749
Nov 18 '18 at 3:47
add a comment |
I have had the same issue as the questioner. I attempted this and once I triedlibrary(caret)I got the same 1st error as the questioner.
– a.powell
Nov 13 '18 at 18:25
Maybe it has something to do with the R version, as pointed out by a previous response. I was using R version 3.5.1 (2018-07-02) under Windows 10 Pro. And I used install.packages("caret",dependencies = T). You can try this out and see if there are any dependencies other than the Biobase package for caret.
– user2730749
Nov 18 '18 at 3:47
I have had the same issue as the questioner. I attempted this and once I tried
library(caret) I got the same 1st error as the questioner.– a.powell
Nov 13 '18 at 18:25
I have had the same issue as the questioner. I attempted this and once I tried
library(caret) I got the same 1st error as the questioner.– a.powell
Nov 13 '18 at 18:25
Maybe it has something to do with the R version, as pointed out by a previous response. I was using R version 3.5.1 (2018-07-02) under Windows 10 Pro. And I used install.packages("caret",dependencies = T). You can try this out and see if there are any dependencies other than the Biobase package for caret.
– user2730749
Nov 18 '18 at 3:47
Maybe it has something to do with the R version, as pointed out by a previous response. I was using R version 3.5.1 (2018-07-02) under Windows 10 Pro. And I used install.packages("caret",dependencies = T). You can try this out and see if there are any dependencies other than the Biobase package for caret.
– user2730749
Nov 18 '18 at 3:47
add a comment |
Warning ...
install.packages("BiocManager")
This only works if your R version is >= 3.5.0
for info I've the same problem under a Centos and a Windows.
issue solved on the windows with 3.5.1 R version. Not yet solved on the centOS (3.4.2)
answered Nov 13 '18 at 10:13
G. XibG. Xib
12
add a comment |
Warning ...
install.packages("BiocManager")
This only works if your R version is >= 3.5.0
for info I've the same problem under a Centos and a Windows.
issue solved on the windows with 3.5.1 R version. Not yet solved on the centOS (3.4.2)
answered Nov 13 '18 at 10:13
G. XibG. Xib
12
add a comment |
Warning ...
install.packages("BiocManager")
This only works if your R version is >= 3.5.0
for info I've the same problem under a Centos and a Windows.
issue solved on the windows with 3.5.1 R version. Not yet solved on the centOS (3.4.2)
answered Nov 13 '18 at 10:13
G. XibG. Xib
12
Warning ...
install.packages("BiocManager")
This only works if your R version is >= 3.5.0
for info I've the same problem under a Centos and a Windows.
issue solved on the windows with 3.5.1 R version. Not yet solved on the centOS (3.4.2)
answered Nov 13 '18 at 10:13
G. XibG. Xib
12
answered Nov 13 '18 at 10:13
G. XibG. Xib
12
answered Nov 13 '18 at 10:13
G. XibG. Xib
12
answered Nov 13 '18 at 10:13
G. XibG. Xib
12
12
add a comment |
add a comment |
Thanks for contributing an answer to Stack Overflow!
- Please be sure to answer the question. Provide details and share your research!
But avoid …
- Asking for help, clarification, or responding to other answers.
- Making statements based on opinion; back them up with references or personal experience.
To learn more, see our tips on writing great answers.
Sign up or log in
StackExchange.ready(function ()
StackExchange.helpers.onClickDraftSave('#login-link');
);
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function ()
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53272166%2fcant-install-caret-package-in-r%23new-answer', 'question_page');
);
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function ()
StackExchange.helpers.onClickDraftSave('#login-link');
);
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function ()
StackExchange.helpers.onClickDraftSave('#login-link');
);
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function ()
StackExchange.helpers.onClickDraftSave('#login-link');
);
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
1
Have you tried installing
biobasefirst? See the documentation for installation help– CIAndrews
Nov 13 '18 at 0:52
1
These are confusing messages. Biobase is a Bioconductor package. Neither it, nor dimRed seem to be required for caret, according to its CRAN page. It sounds like your current R environment is just messed up. I would restart R and try again.
– neilfws
Nov 13 '18 at 0:56
It's possible that one of the package required by
caret(and there are a big boatload of them) does havedimRedas a dependency. I just installedcaretand dimRed was installed during the dependencies phase. Si suggestions to reinstall my be a waste of time. (I did already have Biobase installed.)– 42-
Nov 13 '18 at 1:43
I ran install.packages("dimRed", dependencies = T) and now my base error message has changed to - > library("caret") Error: package or namespace load failed for ‘caret’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package called ‘Biobase’. When I try to install Biobase, I'm told that it is not available on R3.4.4. Any ideas?
– coult
Nov 13 '18 at 2:38
I had a similar problem. In my case, as @neilfws mentioned, some of the libraries were likely open in my on-going RStudio session. I just re-started RStudio, used
install.packages("caret", dependencies = TRUE)and all was fine.– JASC
Jan 10 at 16:40