How to create a error bar for each color class in R?
Here is my code:
ggline(ToothGrowth, x = "dose", y = "len",
add = c("mean_se", "jitter"),
color = "supp", palette = "jco")
Just for reference, ToothGrowth
is at the bottom of this question.
My code keeps giving me this plot:
which is the +/- error of all the points, instead of the error bar for each "supp" that I delineated by color. I need it to print something like this:
What am I doing wrong here?
Thank you for the help.
Here is ToothGrowth
:
len supp dose
1 4.2 VC 0.5
2 11.5 VC 0.5
3 7.3 VC 0.5
4 5.8 VC 0.5
5 6.4 VC 0.5
6 10.0 VC 0.5
7 11.2 VC 0.5
8 11.2 VC 0.5
9 5.2 VC 0.5
10 7.0 VC 0.5
11 16.5 VC 1
12 16.5 VC 1
13 15.2 VC 1
14 17.3 VC 1
15 22.5 VC 1
16 17.3 VC 1
17 13.6 VC 1
18 14.5 VC 1
19 18.8 VC 1
20 15.5 VC 1
21 23.6 VC 2
22 18.5 VC 2
23 33.9 VC 2
24 25.5 VC 2
25 26.4 VC 2
26 32.5 VC 2
27 26.7 VC 2
28 21.5 VC 2
29 23.3 VC 2
30 29.5 VC 2
31 15.2 OJ 0.5
32 21.5 OJ 0.5
33 17.6 OJ 0.5
34 9.7 OJ 0.5
35 14.5 OJ 0.5
36 10.0 OJ 0.5
37 8.2 OJ 0.5
38 9.4 OJ 0.5
39 16.5 OJ 0.5
40 9.7 OJ 0.5
41 19.7 OJ 1
42 23.3 OJ 1
43 23.6 OJ 1
44 26.4 OJ 1
45 20.0 OJ 1
46 25.2 OJ 1
47 25.8 OJ 1
48 21.2 OJ 1
49 14.5 OJ 1
50 27.3 OJ 1
51 25.5 OJ 2
52 26.4 OJ 2
53 22.4 OJ 2
54 24.5 OJ 2
55 24.8 OJ 2
56 30.9 OJ 2
57 26.4 OJ 2
58 27.3 OJ 2
59 29.4 OJ 2
60 23.0 OJ 2
r
add a comment |
Here is my code:
ggline(ToothGrowth, x = "dose", y = "len",
add = c("mean_se", "jitter"),
color = "supp", palette = "jco")
Just for reference, ToothGrowth
is at the bottom of this question.
My code keeps giving me this plot:
which is the +/- error of all the points, instead of the error bar for each "supp" that I delineated by color. I need it to print something like this:
What am I doing wrong here?
Thank you for the help.
Here is ToothGrowth
:
len supp dose
1 4.2 VC 0.5
2 11.5 VC 0.5
3 7.3 VC 0.5
4 5.8 VC 0.5
5 6.4 VC 0.5
6 10.0 VC 0.5
7 11.2 VC 0.5
8 11.2 VC 0.5
9 5.2 VC 0.5
10 7.0 VC 0.5
11 16.5 VC 1
12 16.5 VC 1
13 15.2 VC 1
14 17.3 VC 1
15 22.5 VC 1
16 17.3 VC 1
17 13.6 VC 1
18 14.5 VC 1
19 18.8 VC 1
20 15.5 VC 1
21 23.6 VC 2
22 18.5 VC 2
23 33.9 VC 2
24 25.5 VC 2
25 26.4 VC 2
26 32.5 VC 2
27 26.7 VC 2
28 21.5 VC 2
29 23.3 VC 2
30 29.5 VC 2
31 15.2 OJ 0.5
32 21.5 OJ 0.5
33 17.6 OJ 0.5
34 9.7 OJ 0.5
35 14.5 OJ 0.5
36 10.0 OJ 0.5
37 8.2 OJ 0.5
38 9.4 OJ 0.5
39 16.5 OJ 0.5
40 9.7 OJ 0.5
41 19.7 OJ 1
42 23.3 OJ 1
43 23.6 OJ 1
44 26.4 OJ 1
45 20.0 OJ 1
46 25.2 OJ 1
47 25.8 OJ 1
48 21.2 OJ 1
49 14.5 OJ 1
50 27.3 OJ 1
51 25.5 OJ 2
52 26.4 OJ 2
53 22.4 OJ 2
54 24.5 OJ 2
55 24.8 OJ 2
56 30.9 OJ 2
57 26.4 OJ 2
58 27.3 OJ 2
59 29.4 OJ 2
60 23.0 OJ 2
r
add a comment |
Here is my code:
ggline(ToothGrowth, x = "dose", y = "len",
add = c("mean_se", "jitter"),
color = "supp", palette = "jco")
Just for reference, ToothGrowth
is at the bottom of this question.
My code keeps giving me this plot:
which is the +/- error of all the points, instead of the error bar for each "supp" that I delineated by color. I need it to print something like this:
What am I doing wrong here?
Thank you for the help.
Here is ToothGrowth
:
len supp dose
1 4.2 VC 0.5
2 11.5 VC 0.5
3 7.3 VC 0.5
4 5.8 VC 0.5
5 6.4 VC 0.5
6 10.0 VC 0.5
7 11.2 VC 0.5
8 11.2 VC 0.5
9 5.2 VC 0.5
10 7.0 VC 0.5
11 16.5 VC 1
12 16.5 VC 1
13 15.2 VC 1
14 17.3 VC 1
15 22.5 VC 1
16 17.3 VC 1
17 13.6 VC 1
18 14.5 VC 1
19 18.8 VC 1
20 15.5 VC 1
21 23.6 VC 2
22 18.5 VC 2
23 33.9 VC 2
24 25.5 VC 2
25 26.4 VC 2
26 32.5 VC 2
27 26.7 VC 2
28 21.5 VC 2
29 23.3 VC 2
30 29.5 VC 2
31 15.2 OJ 0.5
32 21.5 OJ 0.5
33 17.6 OJ 0.5
34 9.7 OJ 0.5
35 14.5 OJ 0.5
36 10.0 OJ 0.5
37 8.2 OJ 0.5
38 9.4 OJ 0.5
39 16.5 OJ 0.5
40 9.7 OJ 0.5
41 19.7 OJ 1
42 23.3 OJ 1
43 23.6 OJ 1
44 26.4 OJ 1
45 20.0 OJ 1
46 25.2 OJ 1
47 25.8 OJ 1
48 21.2 OJ 1
49 14.5 OJ 1
50 27.3 OJ 1
51 25.5 OJ 2
52 26.4 OJ 2
53 22.4 OJ 2
54 24.5 OJ 2
55 24.8 OJ 2
56 30.9 OJ 2
57 26.4 OJ 2
58 27.3 OJ 2
59 29.4 OJ 2
60 23.0 OJ 2
r
Here is my code:
ggline(ToothGrowth, x = "dose", y = "len",
add = c("mean_se", "jitter"),
color = "supp", palette = "jco")
Just for reference, ToothGrowth
is at the bottom of this question.
My code keeps giving me this plot:
which is the +/- error of all the points, instead of the error bar for each "supp" that I delineated by color. I need it to print something like this:
What am I doing wrong here?
Thank you for the help.
Here is ToothGrowth
:
len supp dose
1 4.2 VC 0.5
2 11.5 VC 0.5
3 7.3 VC 0.5
4 5.8 VC 0.5
5 6.4 VC 0.5
6 10.0 VC 0.5
7 11.2 VC 0.5
8 11.2 VC 0.5
9 5.2 VC 0.5
10 7.0 VC 0.5
11 16.5 VC 1
12 16.5 VC 1
13 15.2 VC 1
14 17.3 VC 1
15 22.5 VC 1
16 17.3 VC 1
17 13.6 VC 1
18 14.5 VC 1
19 18.8 VC 1
20 15.5 VC 1
21 23.6 VC 2
22 18.5 VC 2
23 33.9 VC 2
24 25.5 VC 2
25 26.4 VC 2
26 32.5 VC 2
27 26.7 VC 2
28 21.5 VC 2
29 23.3 VC 2
30 29.5 VC 2
31 15.2 OJ 0.5
32 21.5 OJ 0.5
33 17.6 OJ 0.5
34 9.7 OJ 0.5
35 14.5 OJ 0.5
36 10.0 OJ 0.5
37 8.2 OJ 0.5
38 9.4 OJ 0.5
39 16.5 OJ 0.5
40 9.7 OJ 0.5
41 19.7 OJ 1
42 23.3 OJ 1
43 23.6 OJ 1
44 26.4 OJ 1
45 20.0 OJ 1
46 25.2 OJ 1
47 25.8 OJ 1
48 21.2 OJ 1
49 14.5 OJ 1
50 27.3 OJ 1
51 25.5 OJ 2
52 26.4 OJ 2
53 22.4 OJ 2
54 24.5 OJ 2
55 24.8 OJ 2
56 30.9 OJ 2
57 26.4 OJ 2
58 27.3 OJ 2
59 29.4 OJ 2
60 23.0 OJ 2
r
r
edited Nov 12 '18 at 15:24
s_t
3,22321031
3,22321031
asked Nov 12 '18 at 15:16
RneryRnery
1
1
add a comment |
add a comment |
1 Answer
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I've tried your code, and it seems not having problems, as stated also here.
However you can also try to use ggplot2
package:
library(ggsci) # to have the blue and yellow theme
ggplot(ToothGrowth, aes( x = dose, y = len, color = supp, group = supp )) +
geom_jitter()+ # jitter it
stat_summary(fun.y = mean, # here add the summary, I suppose
fun.ymin = function(x) mean(x) - sd(x), # mean and +-sd
fun.ymax = function(x) mean(x) + sd(x),
geom = "errorbar") +
stat_summary(fun.y= function(x) mean(x), geom="line", aes(group = supp))+
stat_summary(fun.y = mean,geom = "point") +
# here you add the line
scale_color_jco()+ # here the colors
theme(panel.background = element_rect(fill = "white", colour = "black")) # you can customize
# many features with ggplot
add a comment |
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1 Answer
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active
oldest
votes
1 Answer
1
active
oldest
votes
active
oldest
votes
active
oldest
votes
I've tried your code, and it seems not having problems, as stated also here.
However you can also try to use ggplot2
package:
library(ggsci) # to have the blue and yellow theme
ggplot(ToothGrowth, aes( x = dose, y = len, color = supp, group = supp )) +
geom_jitter()+ # jitter it
stat_summary(fun.y = mean, # here add the summary, I suppose
fun.ymin = function(x) mean(x) - sd(x), # mean and +-sd
fun.ymax = function(x) mean(x) + sd(x),
geom = "errorbar") +
stat_summary(fun.y= function(x) mean(x), geom="line", aes(group = supp))+
stat_summary(fun.y = mean,geom = "point") +
# here you add the line
scale_color_jco()+ # here the colors
theme(panel.background = element_rect(fill = "white", colour = "black")) # you can customize
# many features with ggplot
add a comment |
I've tried your code, and it seems not having problems, as stated also here.
However you can also try to use ggplot2
package:
library(ggsci) # to have the blue and yellow theme
ggplot(ToothGrowth, aes( x = dose, y = len, color = supp, group = supp )) +
geom_jitter()+ # jitter it
stat_summary(fun.y = mean, # here add the summary, I suppose
fun.ymin = function(x) mean(x) - sd(x), # mean and +-sd
fun.ymax = function(x) mean(x) + sd(x),
geom = "errorbar") +
stat_summary(fun.y= function(x) mean(x), geom="line", aes(group = supp))+
stat_summary(fun.y = mean,geom = "point") +
# here you add the line
scale_color_jco()+ # here the colors
theme(panel.background = element_rect(fill = "white", colour = "black")) # you can customize
# many features with ggplot
add a comment |
I've tried your code, and it seems not having problems, as stated also here.
However you can also try to use ggplot2
package:
library(ggsci) # to have the blue and yellow theme
ggplot(ToothGrowth, aes( x = dose, y = len, color = supp, group = supp )) +
geom_jitter()+ # jitter it
stat_summary(fun.y = mean, # here add the summary, I suppose
fun.ymin = function(x) mean(x) - sd(x), # mean and +-sd
fun.ymax = function(x) mean(x) + sd(x),
geom = "errorbar") +
stat_summary(fun.y= function(x) mean(x), geom="line", aes(group = supp))+
stat_summary(fun.y = mean,geom = "point") +
# here you add the line
scale_color_jco()+ # here the colors
theme(panel.background = element_rect(fill = "white", colour = "black")) # you can customize
# many features with ggplot
I've tried your code, and it seems not having problems, as stated also here.
However you can also try to use ggplot2
package:
library(ggsci) # to have the blue and yellow theme
ggplot(ToothGrowth, aes( x = dose, y = len, color = supp, group = supp )) +
geom_jitter()+ # jitter it
stat_summary(fun.y = mean, # here add the summary, I suppose
fun.ymin = function(x) mean(x) - sd(x), # mean and +-sd
fun.ymax = function(x) mean(x) + sd(x),
geom = "errorbar") +
stat_summary(fun.y= function(x) mean(x), geom="line", aes(group = supp))+
stat_summary(fun.y = mean,geom = "point") +
# here you add the line
scale_color_jco()+ # here the colors
theme(panel.background = element_rect(fill = "white", colour = "black")) # you can customize
# many features with ggplot
edited Nov 12 '18 at 19:17
answered Nov 12 '18 at 16:26
s_ts_t
3,22321031
3,22321031
add a comment |
add a comment |
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