dicom file read error: 'RuntimeError: generator raised StopIteration'
0
below is the python code
def load_scan(path):
print(path)
slices = [dicom.read_file(path + '/' + s) for s in os.listdir(path)]
slices.sort(key = lambda x: int(x.InstanceNumber))
try:
slice_thickness = np.abs(slices[0].ImagePositionPatient[2] - slices[1].ImagePositionPatient[2])
except:
slice_thickness = np.abs(slices[0].SliceLocation - slices[1].SliceLocation)
for s in slices:
s.SliceThickness = slice_thickness
return slices
patient = load_scan(filepath)
i downloaded the sample dicom files from link
any help would be great... how to read dicom files and then process them.
python-3.x pydicom
asked Nov 14 '18 at 9:07
RadhiRadhi
3,396123557
add a comment |
0
below is the python code
def load_scan(path):
print(path)
slices = [dicom.read_file(path + '/' + s) for s in os.listdir(path)]
slices.sort(key = lambda x: int(x.InstanceNumber))
try:
slice_thickness = np.abs(slices[0].ImagePositionPatient[2] - slices[1].ImagePositionPatient[2])
except:
slice_thickness = np.abs(slices[0].SliceLocation - slices[1].SliceLocation)
for s in slices:
s.SliceThickness = slice_thickness
return slices
patient = load_scan(filepath)
i downloaded the sample dicom files from link
any help would be great... how to read dicom files and then process them.
python-3.x pydicom
asked Nov 14 '18 at 9:07
RadhiRadhi
3,396123557
This is a python 3.7 error, probablydicomdoes not yet support 3.7
– Chris_Rands
Nov 14 '18 at 9:11
add a comment |
0
0
0
below is the python code
def load_scan(path):
print(path)
slices = [dicom.read_file(path + '/' + s) for s in os.listdir(path)]
slices.sort(key = lambda x: int(x.InstanceNumber))
try:
slice_thickness = np.abs(slices[0].ImagePositionPatient[2] - slices[1].ImagePositionPatient[2])
except:
slice_thickness = np.abs(slices[0].SliceLocation - slices[1].SliceLocation)
for s in slices:
s.SliceThickness = slice_thickness
return slices
patient = load_scan(filepath)
i downloaded the sample dicom files from link
any help would be great... how to read dicom files and then process them.
python-3.x pydicom
asked Nov 14 '18 at 9:07
RadhiRadhi
3,396123557
below is the python code
def load_scan(path):
print(path)
slices = [dicom.read_file(path + '/' + s) for s in os.listdir(path)]
slices.sort(key = lambda x: int(x.InstanceNumber))
try:
slice_thickness = np.abs(slices[0].ImagePositionPatient[2] - slices[1].ImagePositionPatient[2])
except:
slice_thickness = np.abs(slices[0].SliceLocation - slices[1].SliceLocation)
for s in slices:
s.SliceThickness = slice_thickness
return slices
patient = load_scan(filepath)
i downloaded the sample dicom files from link
any help would be great... how to read dicom files and then process them.
python-3.x pydicom
python-3.x pydicom
asked Nov 14 '18 at 9:07
RadhiRadhi
3,396123557
asked Nov 14 '18 at 9:07
RadhiRadhi
3,396123557
asked Nov 14 '18 at 9:07
RadhiRadhi
3,396123557
asked Nov 14 '18 at 9:07
RadhiRadhi
3,396123557
asked Nov 14 '18 at 9:07
RadhiRadhi
3,396123557
3,396123557
This is a python 3.7 error, probablydicomdoes not yet support 3.7
– Chris_Rands
Nov 14 '18 at 9:11
add a comment |
This is a python 3.7 error, probablydicomdoes not yet support 3.7
– Chris_Rands
Nov 14 '18 at 9:11
This is a python 3.7 error, probably
dicom does not yet support 3.7– Chris_Rands
Nov 14 '18 at 9:11
This is a python 3.7 error, probably
dicom does not yet support 3.7– Chris_Rands
Nov 14 '18 at 9:11
add a comment |
0
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This is a python 3.7 error, probably
dicomdoes not yet support 3.7– Chris_Rands
Nov 14 '18 at 9:11