Xarray : Operations with cubes with different granularities / levels same hierarchy / Multiindex
I am having trouble figuring out how to work with xarray DataArrays and DataSets and perform algebra operations; especially when the dimensions have different levels and my cubes have different granularities. I would be very grateful if someone could suggest me some documentation or give me some advice.
In the example below I am trying to compute the contribution of each child (SKU) under a parent (PFS). I found that to get the right values I need to convert the cube slice into a pandas dataframe. Otherwise, Xarray duplicates the dimension I am working with.
import pandas as pd
import numpy as np
import xarray as xr
from itertools import product
# Create hierachies
usage_type_entities = (('Regular',), ('Sample',),
('Tender',), ('Clinic Trial',))
usage_type_tree = pd.MultiIndex.from_tuples(
usage_type_entities, names=('Usage_Type',))
product_tree_hierarchy = (("PF1", "PFS1", "SKU1"),
("PF1", "PFS1", "SKU2"),
("PF1", "PFS2", "SKU3"),
("PF1", "PFS2", "SKU4"),
("PF2", "PFS3", "SKU5"))
product_tree_entities = ("PF", "PFS", "SKU")
product_tree = pd.MultiIndex.from_tuples(product_tree_hierarchy,
names=product_tree_entities)
market_tree_hierarchy = (("Group1", "Region1", "Market1"),
("Group1", "Region1", "Market2"),
("Group1", "Region2", "Market3"),
("Group1", "Region2", "Market4"),
("Group2", "Region3", "Market5"))
market_tree_entities = ("Groups", "Regions", "Markets")
market_tree = pd.MultiIndex.from_tuples(market_tree_hierarchy,
names=market_tree_entities)
time_tree_hierarchy = [(y, y+q) for y, q in product([str(2013+x) for x in range(6)],
["Q"+str(int(q)) for q in np.arange(1, 4.1, 1)])][0:22]
time_entities = ("Year", "Quarter")
time_tree = pd.MultiIndex.from_tuples(time_tree_hierarchy, names=time_entities)
# Create X-array Dataset
x1 = np.random.randint(100, size=(len(usage_type_tree), len(
product_tree), len(market_tree), len(time_tree)))
xda = xr.DataArray(x1, coords=(usage_type_tree, product_tree, market_tree, time_tree),
dims=("Usage", "Product", "Market", "Time"))
# Operations - I need to convert my slice into a pandas df to get
the right values. Converting to pandas df works ok.
market = "Market1"
ut = "Regular"
(xda.sel(Markets=market, Usage_Type=ut)[:, 0].to_pandas() /
xda.sel(Markets=market, Usage_Type=ut)[:, 0].to_pandas().groupby("PFS").sum(axis=0))
If I don't convert the slice to pandas df and I keep it as a xarray dataset, the dimension gets duplicated. For example, the line below produces a DatArray(Product: 5, Time: 22, PFS: 3), when it should be just (Product: 5, Time: 22)
(xda.sel(Markets=market, Usage_Type=ut)[:, 0] /
xda.sel(Markets=market, Usage_Type=ut)[:, 0].groupby("PFS").sum(axis=0))
python-xarray
add a comment |
I am having trouble figuring out how to work with xarray DataArrays and DataSets and perform algebra operations; especially when the dimensions have different levels and my cubes have different granularities. I would be very grateful if someone could suggest me some documentation or give me some advice.
In the example below I am trying to compute the contribution of each child (SKU) under a parent (PFS). I found that to get the right values I need to convert the cube slice into a pandas dataframe. Otherwise, Xarray duplicates the dimension I am working with.
import pandas as pd
import numpy as np
import xarray as xr
from itertools import product
# Create hierachies
usage_type_entities = (('Regular',), ('Sample',),
('Tender',), ('Clinic Trial',))
usage_type_tree = pd.MultiIndex.from_tuples(
usage_type_entities, names=('Usage_Type',))
product_tree_hierarchy = (("PF1", "PFS1", "SKU1"),
("PF1", "PFS1", "SKU2"),
("PF1", "PFS2", "SKU3"),
("PF1", "PFS2", "SKU4"),
("PF2", "PFS3", "SKU5"))
product_tree_entities = ("PF", "PFS", "SKU")
product_tree = pd.MultiIndex.from_tuples(product_tree_hierarchy,
names=product_tree_entities)
market_tree_hierarchy = (("Group1", "Region1", "Market1"),
("Group1", "Region1", "Market2"),
("Group1", "Region2", "Market3"),
("Group1", "Region2", "Market4"),
("Group2", "Region3", "Market5"))
market_tree_entities = ("Groups", "Regions", "Markets")
market_tree = pd.MultiIndex.from_tuples(market_tree_hierarchy,
names=market_tree_entities)
time_tree_hierarchy = [(y, y+q) for y, q in product([str(2013+x) for x in range(6)],
["Q"+str(int(q)) for q in np.arange(1, 4.1, 1)])][0:22]
time_entities = ("Year", "Quarter")
time_tree = pd.MultiIndex.from_tuples(time_tree_hierarchy, names=time_entities)
# Create X-array Dataset
x1 = np.random.randint(100, size=(len(usage_type_tree), len(
product_tree), len(market_tree), len(time_tree)))
xda = xr.DataArray(x1, coords=(usage_type_tree, product_tree, market_tree, time_tree),
dims=("Usage", "Product", "Market", "Time"))
# Operations - I need to convert my slice into a pandas df to get
the right values. Converting to pandas df works ok.
market = "Market1"
ut = "Regular"
(xda.sel(Markets=market, Usage_Type=ut)[:, 0].to_pandas() /
xda.sel(Markets=market, Usage_Type=ut)[:, 0].to_pandas().groupby("PFS").sum(axis=0))
If I don't convert the slice to pandas df and I keep it as a xarray dataset, the dimension gets duplicated. For example, the line below produces a DatArray(Product: 5, Time: 22, PFS: 3), when it should be just (Product: 5, Time: 22)
(xda.sel(Markets=market, Usage_Type=ut)[:, 0] /
xda.sel(Markets=market, Usage_Type=ut)[:, 0].groupby("PFS").sum(axis=0))
python-xarray
add a comment |
I am having trouble figuring out how to work with xarray DataArrays and DataSets and perform algebra operations; especially when the dimensions have different levels and my cubes have different granularities. I would be very grateful if someone could suggest me some documentation or give me some advice.
In the example below I am trying to compute the contribution of each child (SKU) under a parent (PFS). I found that to get the right values I need to convert the cube slice into a pandas dataframe. Otherwise, Xarray duplicates the dimension I am working with.
import pandas as pd
import numpy as np
import xarray as xr
from itertools import product
# Create hierachies
usage_type_entities = (('Regular',), ('Sample',),
('Tender',), ('Clinic Trial',))
usage_type_tree = pd.MultiIndex.from_tuples(
usage_type_entities, names=('Usage_Type',))
product_tree_hierarchy = (("PF1", "PFS1", "SKU1"),
("PF1", "PFS1", "SKU2"),
("PF1", "PFS2", "SKU3"),
("PF1", "PFS2", "SKU4"),
("PF2", "PFS3", "SKU5"))
product_tree_entities = ("PF", "PFS", "SKU")
product_tree = pd.MultiIndex.from_tuples(product_tree_hierarchy,
names=product_tree_entities)
market_tree_hierarchy = (("Group1", "Region1", "Market1"),
("Group1", "Region1", "Market2"),
("Group1", "Region2", "Market3"),
("Group1", "Region2", "Market4"),
("Group2", "Region3", "Market5"))
market_tree_entities = ("Groups", "Regions", "Markets")
market_tree = pd.MultiIndex.from_tuples(market_tree_hierarchy,
names=market_tree_entities)
time_tree_hierarchy = [(y, y+q) for y, q in product([str(2013+x) for x in range(6)],
["Q"+str(int(q)) for q in np.arange(1, 4.1, 1)])][0:22]
time_entities = ("Year", "Quarter")
time_tree = pd.MultiIndex.from_tuples(time_tree_hierarchy, names=time_entities)
# Create X-array Dataset
x1 = np.random.randint(100, size=(len(usage_type_tree), len(
product_tree), len(market_tree), len(time_tree)))
xda = xr.DataArray(x1, coords=(usage_type_tree, product_tree, market_tree, time_tree),
dims=("Usage", "Product", "Market", "Time"))
# Operations - I need to convert my slice into a pandas df to get
the right values. Converting to pandas df works ok.
market = "Market1"
ut = "Regular"
(xda.sel(Markets=market, Usage_Type=ut)[:, 0].to_pandas() /
xda.sel(Markets=market, Usage_Type=ut)[:, 0].to_pandas().groupby("PFS").sum(axis=0))
If I don't convert the slice to pandas df and I keep it as a xarray dataset, the dimension gets duplicated. For example, the line below produces a DatArray(Product: 5, Time: 22, PFS: 3), when it should be just (Product: 5, Time: 22)
(xda.sel(Markets=market, Usage_Type=ut)[:, 0] /
xda.sel(Markets=market, Usage_Type=ut)[:, 0].groupby("PFS").sum(axis=0))
python-xarray
I am having trouble figuring out how to work with xarray DataArrays and DataSets and perform algebra operations; especially when the dimensions have different levels and my cubes have different granularities. I would be very grateful if someone could suggest me some documentation or give me some advice.
In the example below I am trying to compute the contribution of each child (SKU) under a parent (PFS). I found that to get the right values I need to convert the cube slice into a pandas dataframe. Otherwise, Xarray duplicates the dimension I am working with.
import pandas as pd
import numpy as np
import xarray as xr
from itertools import product
# Create hierachies
usage_type_entities = (('Regular',), ('Sample',),
('Tender',), ('Clinic Trial',))
usage_type_tree = pd.MultiIndex.from_tuples(
usage_type_entities, names=('Usage_Type',))
product_tree_hierarchy = (("PF1", "PFS1", "SKU1"),
("PF1", "PFS1", "SKU2"),
("PF1", "PFS2", "SKU3"),
("PF1", "PFS2", "SKU4"),
("PF2", "PFS3", "SKU5"))
product_tree_entities = ("PF", "PFS", "SKU")
product_tree = pd.MultiIndex.from_tuples(product_tree_hierarchy,
names=product_tree_entities)
market_tree_hierarchy = (("Group1", "Region1", "Market1"),
("Group1", "Region1", "Market2"),
("Group1", "Region2", "Market3"),
("Group1", "Region2", "Market4"),
("Group2", "Region3", "Market5"))
market_tree_entities = ("Groups", "Regions", "Markets")
market_tree = pd.MultiIndex.from_tuples(market_tree_hierarchy,
names=market_tree_entities)
time_tree_hierarchy = [(y, y+q) for y, q in product([str(2013+x) for x in range(6)],
["Q"+str(int(q)) for q in np.arange(1, 4.1, 1)])][0:22]
time_entities = ("Year", "Quarter")
time_tree = pd.MultiIndex.from_tuples(time_tree_hierarchy, names=time_entities)
# Create X-array Dataset
x1 = np.random.randint(100, size=(len(usage_type_tree), len(
product_tree), len(market_tree), len(time_tree)))
xda = xr.DataArray(x1, coords=(usage_type_tree, product_tree, market_tree, time_tree),
dims=("Usage", "Product", "Market", "Time"))
# Operations - I need to convert my slice into a pandas df to get
the right values. Converting to pandas df works ok.
market = "Market1"
ut = "Regular"
(xda.sel(Markets=market, Usage_Type=ut)[:, 0].to_pandas() /
xda.sel(Markets=market, Usage_Type=ut)[:, 0].to_pandas().groupby("PFS").sum(axis=0))
If I don't convert the slice to pandas df and I keep it as a xarray dataset, the dimension gets duplicated. For example, the line below produces a DatArray(Product: 5, Time: 22, PFS: 3), when it should be just (Product: 5, Time: 22)
(xda.sel(Markets=market, Usage_Type=ut)[:, 0] /
xda.sel(Markets=market, Usage_Type=ut)[:, 0].groupby("PFS").sum(axis=0))
python-xarray
python-xarray
asked Nov 11 at 16:38
Joan Ponsa-Cobas
61
61
add a comment |
add a comment |
active
oldest
votes
Your Answer
StackExchange.ifUsing("editor", function ()
StackExchange.using("externalEditor", function ()
StackExchange.using("snippets", function ()
StackExchange.snippets.init();
);
);
, "code-snippets");
StackExchange.ready(function()
var channelOptions =
tags: "".split(" "),
id: "1"
;
initTagRenderer("".split(" "), "".split(" "), channelOptions);
StackExchange.using("externalEditor", function()
// Have to fire editor after snippets, if snippets enabled
if (StackExchange.settings.snippets.snippetsEnabled)
StackExchange.using("snippets", function()
createEditor();
);
else
createEditor();
);
function createEditor()
StackExchange.prepareEditor(
heartbeatType: 'answer',
autoActivateHeartbeat: false,
convertImagesToLinks: true,
noModals: true,
showLowRepImageUploadWarning: true,
reputationToPostImages: 10,
bindNavPrevention: true,
postfix: "",
imageUploader:
brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
allowUrls: true
,
onDemand: true,
discardSelector: ".discard-answer"
,immediatelyShowMarkdownHelp:true
);
);
Sign up or log in
StackExchange.ready(function ()
StackExchange.helpers.onClickDraftSave('#login-link');
);
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function ()
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53250863%2fxarray-operations-with-cubes-with-different-granularities-levels-same-hierar%23new-answer', 'question_page');
);
Post as a guest
Required, but never shown
active
oldest
votes
active
oldest
votes
active
oldest
votes
active
oldest
votes
Thanks for contributing an answer to Stack Overflow!
- Please be sure to answer the question. Provide details and share your research!
But avoid …
- Asking for help, clarification, or responding to other answers.
- Making statements based on opinion; back them up with references or personal experience.
To learn more, see our tips on writing great answers.
Some of your past answers have not been well-received, and you're in danger of being blocked from answering.
Please pay close attention to the following guidance:
- Please be sure to answer the question. Provide details and share your research!
But avoid …
- Asking for help, clarification, or responding to other answers.
- Making statements based on opinion; back them up with references or personal experience.
To learn more, see our tips on writing great answers.
Sign up or log in
StackExchange.ready(function ()
StackExchange.helpers.onClickDraftSave('#login-link');
);
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function ()
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53250863%2fxarray-operations-with-cubes-with-different-granularities-levels-same-hierar%23new-answer', 'question_page');
);
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function ()
StackExchange.helpers.onClickDraftSave('#login-link');
);
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function ()
StackExchange.helpers.onClickDraftSave('#login-link');
);
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function ()
StackExchange.helpers.onClickDraftSave('#login-link');
);
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown